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  5. Zm00001d048343_T001

Zm00001d048343_T001


Description : ubiquitin family protein


Gene families : OG_01_0002916 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002916_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d048343_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d048343_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_96
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_7


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 8 96
IPR015496 Ubiquilin PANTHER 10 530
IPR015940 UBA Pfam 492 528
IPR015940 UBA SMART 492 530
IPR000626 Ubiquitin-like_dom ProSiteProfiles 17 86
IPR000626 Ubiquitin-like_dom SMART 17 88
IPR000626 Ubiquitin-like_dom Pfam 19 87
IPR009060 UBA-like_sf SUPERFAMILY 488 530
IPR015940 UBA ProSiteProfiles 486 531
IPR006636 STI1_HS-bd SMART 133 180
IPR006636 STI1_HS-bd SMART 184 223
IPR006636 STI1_HS-bd SMART 395 430
IPR006636 STI1_HS-bd SMART 358 391
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 8 96
IPR006636 STI1_HS-bd SMART 133 180
IPR006636 STI1_HS-bd SMART 184 223
IPR006636 STI1_HS-bd SMART 395 430
IPR006636 STI1_HS-bd SMART 358 391
IPR015940 UBA Pfam 492 528
IPR015940 UBA SMART 492 530
IPR000626 Ubiquitin-like_dom SMART 17 88
IPR015940 UBA ProSiteProfiles 486 531
IPR000626 Ubiquitin-like_dom ProSiteProfiles 17 86
IPR000626 Ubiquitin-like_dom Pfam 20 86
IPR009060 UBA-like_sf SUPERFAMILY 488 530

No CAZYmes available for this sequence

No external refs found!