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  5. Zm00001d048404_T005

Zm00001d048404_T005


Description : Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein


Gene families : OG_01_0005352 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005352_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d048404_T005
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d048404_T005
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_184


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003349 JmjN ProSiteProfiles 27 68
IPR013087 Znf_C2H2_type ProSitePatterns 1450 1472
IPR013087 Znf_C2H2_type ProSiteProfiles 1418 1447
IPR013087 Znf_C2H2_type ProSiteProfiles 1478 1505
IPR003349 JmjN Pfam 28 61
IPR036236 Znf_C2H2_sf SUPERFAMILY 1446 1500
IPR003347 JmjC_dom SMART 221 398
IPR013087 Znf_C2H2_type ProSiteProfiles 1448 1477
IPR003347 JmjC_dom ProSiteProfiles 221 398
IPR013087 Znf_C2H2_type SMART 1418 1442
IPR013087 Znf_C2H2_type SMART 1478 1504
IPR013087 Znf_C2H2_type SMART 1448 1472
IPR013087 Znf_C2H2_type SMART 1395 1417
IPR013087 Znf_C2H2_type ProSitePatterns 1480 1504
IPR036236 Znf_C2H2_sf SUPERFAMILY 1420 1455
IPR003349 JmjN SMART 26 67
IPR013087 Znf_C2H2_type ProSitePatterns 1420 1442
IPR003347 JmjC_dom Pfam 255 381
IPR003347 JmjC_dom Pfam 254 381
IPR003349 JmjN Pfam 28 61
IPR013087 Znf_C2H2_type ProSitePatterns 1450 1472
IPR036236 Znf_C2H2_sf SUPERFAMILY 1420 1455
IPR013087 Znf_C2H2_type ProSiteProfiles 1448 1477
IPR003349 JmjN ProSiteProfiles 27 68
IPR013087 Znf_C2H2_type ProSitePatterns 1420 1442
IPR003347 JmjC_dom SMART 221 398
IPR013087 Znf_C2H2_type ProSiteProfiles 1478 1505
IPR013087 Znf_C2H2_type SMART 1418 1442
IPR013087 Znf_C2H2_type SMART 1478 1504
IPR013087 Znf_C2H2_type SMART 1448 1472
IPR013087 Znf_C2H2_type SMART 1395 1417
IPR013087 Znf_C2H2_type ProSitePatterns 1480 1504
IPR003347 JmjC_dom ProSiteProfiles 221 398
IPR036236 Znf_C2H2_sf SUPERFAMILY 1446 1500
IPR003349 JmjN SMART 26 67
IPR013087 Znf_C2H2_type ProSiteProfiles 1418 1447

No CAZYmes available for this sequence

No external refs found!