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  5. Zm00001d048418_T001

Zm00001d048418_T001


Description : expansin 11


Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d048418_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d048418_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_23
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_15


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0009664 plant-type cell wall organization ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036908 RlpA-like_sf SUPERFAMILY 26 177
IPR036749 Expansin_CBD_sf Gene3D 159 253
IPR007112 Expansin/allergen_DPBB_dom SMART 62 149
IPR007118 Expan_Lol_pI PRINTS 234 248
IPR007118 Expan_Lol_pI PRINTS 142 158
IPR007118 Expan_Lol_pI PRINTS 196 210
IPR007118 Expan_Lol_pI PRINTS 44 62
IPR007118 Expan_Lol_pI PRINTS 26 41
IPR007118 Expan_Lol_pI PRINTS 66 84
IPR009009 RlpA-like_DPBB Pfam 62 149
IPR002963 Expansin PANTHER 10 248
IPR036908 RlpA-like_sf Gene3D 12 154
IPR007117 Expansin_CBD Pfam 160 237
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 45 159
IPR002963 Expansin PRINTS 57 71
IPR002963 Expansin PRINTS 134 147
IPR002963 Expansin PRINTS 117 134
IPR002963 Expansin PRINTS 234 250
IPR002963 Expansin PRINTS 170 191
IPR002963 Expansin PRINTS 205 226
IPR002963 Expansin PRINTS 98 108
IPR002963 Expansin PRINTS 158 170
IPR036749 Expansin_CBD_sf SUPERFAMILY 156 248
IPR007117 Expansin_CBD ProSiteProfiles 169 248
IPR002963 Expansin PANTHER 8 253
IPR036749 Expansin_CBD_sf SUPERFAMILY 156 248
IPR007117 Expansin_CBD ProSiteProfiles 169 248
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 45 159
IPR036908 RlpA-like_sf SUPERFAMILY 26 177
IPR007118 Expan_Lol_pI PRINTS 234 248
IPR007118 Expan_Lol_pI PRINTS 142 158
IPR007118 Expan_Lol_pI PRINTS 196 210
IPR007118 Expan_Lol_pI PRINTS 44 62
IPR007118 Expan_Lol_pI PRINTS 26 41
IPR007118 Expan_Lol_pI PRINTS 66 84
IPR009009 RlpA-like_DPBB Pfam 62 149
IPR007112 Expansin/allergen_DPBB_dom SMART 62 149
IPR007117 Expansin_CBD Pfam 161 237
IPR036749 Expansin_CBD_sf Gene3D 159 253
IPR036908 RlpA-like_sf Gene3D 12 154
IPR002963 Expansin PRINTS 57 71
IPR002963 Expansin PRINTS 134 147
IPR002963 Expansin PRINTS 117 134
IPR002963 Expansin PRINTS 234 250
IPR002963 Expansin PRINTS 170 191
IPR002963 Expansin PRINTS 205 226
IPR002963 Expansin PRINTS 98 108
IPR002963 Expansin PRINTS 158 170

No CAZYmes available for this sequence

No external refs found!