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Description : oligouridylate binding protein 1B
Gene families : OG_01_0006273 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006273_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d048824_T004 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d048824_T004 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_274 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_143 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000504 | RRM_dom | ProSiteProfiles | 160 | 238 |
| IPR003954 | RRM_dom_euk | SMART | 161 | 234 |
| IPR003954 | RRM_dom_euk | SMART | 280 | 349 |
| IPR000504 | RRM_dom | SMART | 76 | 145 |
| IPR000504 | RRM_dom | SMART | 161 | 234 |
| IPR000504 | RRM_dom | SMART | 280 | 349 |
| IPR000504 | RRM_dom | Pfam | 162 | 232 |
| IPR000504 | RRM_dom | Pfam | 77 | 143 |
| IPR000504 | RRM_dom | Pfam | 281 | 347 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 152 | 243 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 3 | 158 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 257 | 359 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 159 | 256 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 59 | 154 |
| IPR000504 | RRM_dom | ProSiteProfiles | 75 | 149 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 268 | 356 |
| IPR000504 | RRM_dom | ProSiteProfiles | 279 | 353 |
| IPR000504 | RRM_dom | ProSiteProfiles | 75 | 149 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 59 | 154 |
| IPR000504 | RRM_dom | SMART | 161 | 234 |
| IPR000504 | RRM_dom | SMART | 76 | 145 |
| IPR000504 | RRM_dom | SMART | 280 | 349 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 159 | 256 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 152 | 243 |
| IPR000504 | RRM_dom | ProSiteProfiles | 279 | 353 |
| IPR003954 | RRM_dom_euk | SMART | 161 | 234 |
| IPR003954 | RRM_dom_euk | SMART | 280 | 349 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 257 | 359 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 3 | 158 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 268 | 356 |
| IPR000504 | RRM_dom | Pfam | 77 | 143 |
| IPR000504 | RRM_dom | Pfam | 281 | 347 |
| IPR000504 | RRM_dom | Pfam | 162 | 232 |
| IPR000504 | RRM_dom | ProSiteProfiles | 160 | 238 |
No CAZYmes available for this sequence
| No external refs found! |