Zm00001d049190_T002

Description : minichromosome maintenance (MCM2/3/5) family protein

Gene families : OG_01_0008304 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008304_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049190_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049190_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_6

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006270	DNA replication initiation	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010639	negative regulation of organelle organization	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0032392	DNA geometric change	None	Extended
BP	GO:0032508	DNA duplex unwinding	ISM	GOs from InterProScan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032780	negative regulation of ATP-dependent activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042555	MCM complex	ISM	GOs from InterProScan
BP	GO:0043086	negative regulation of catalytic activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043462	regulation of ATP-dependent activity	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051095	regulation of helicase activity	None	Extended
BP	GO:0051097	negative regulation of helicase activity	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1905462	regulation of DNA duplex unwinding	None	Extended
BP	GO:1905463	negative regulation of DNA duplex unwinding	None	Extended
BP	GO:1905774	regulation of DNA helicase activity	None	Extended
BP	GO:1905775	negative regulation of DNA helicase activity	ISM	GOs from InterProScan
BP	GO:2001251	negative regulation of chromosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012340	NA-bd_OB-fold	SUPERFAMILY	270	526
IPR008045	MCM2	PRINTS	378	395
IPR008045	MCM2	PRINTS	521	532
IPR008045	MCM2	PRINTS	506	517
IPR008045	MCM2	PRINTS	401	413
IPR031327	MCM	SMART	365	889
IPR027417	P-loop_NTPase	SUPERFAMILY	567	893
IPR001208	MCM_dom	ProSiteProfiles	557	763
IPR008045	MCM2	Pfam	42	150
IPR012340	NA-bd_OB-fold	Gene3D	369	503
IPR027925	MCM_N	Pfam	269	362
IPR041562	MCM_lid	Pfam	804	888
IPR018525	MCM_CS	ProSitePatterns	666	674
IPR033762	MCM_OB	Pfam	368	504
IPR001208	MCM_dom	Pfam	545	767
IPR031327	MCM	PANTHER	260	950
IPR001208	MCM_dom	PRINTS	710	722
IPR001208	MCM_dom	PRINTS	737	745
IPR001208	MCM_dom	PRINTS	658	672
IPR001208	MCM_dom	PRINTS	686	699
IPR001208	MCM_dom	PRINTS	598	613
IPR027417	P-loop_NTPase	Gene3D	537	911
IPR001208	MCM_dom	PRINTS	710	722
IPR001208	MCM_dom	PRINTS	737	745
IPR001208	MCM_dom	PRINTS	658	672
IPR001208	MCM_dom	PRINTS	686	699
IPR001208	MCM_dom	PRINTS	598	613
IPR027417	P-loop_NTPase	Gene3D	537	911
IPR033762	MCM_OB	Pfam	368	504
IPR001208	MCM_dom	ProSiteProfiles	557	763
IPR018525	MCM_CS	ProSitePatterns	666	674
IPR001208	MCM_dom	Pfam	545	767
IPR008045	MCM2	PRINTS	378	395
IPR008045	MCM2	PRINTS	521	532
IPR008045	MCM2	PRINTS	506	517
IPR008045	MCM2	PRINTS	401	413
IPR027925	MCM_N	Pfam	269	362
IPR027417	P-loop_NTPase	SUPERFAMILY	567	893
IPR031327	MCM	SMART	365	889
IPR012340	NA-bd_OB-fold	SUPERFAMILY	270	526
IPR008045	MCM2	Pfam	42	244
IPR041562	MCM_lid	Pfam	805	887
IPR031327	MCM	PANTHER	187	989

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d049190_T002

Expression Profile

Co-expression Networks

Functional Annotation