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  5. Zm00001d049251_T005

Zm00001d049251_T005


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_01_0002264 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002264_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049251_T005
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049251_T005
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_181
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_561


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0030246 carbohydrate binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014718 GH-type_carb-bd Gene3D 69 378
IPR010325 Rhamnogal_lyase Pfam 59 278
IPR011013 Gal_mutarotase_sf_dom SUPERFAMILY 76 373
IPR029411 RG-lyase_III Pfam 517 709
IPR029413 RG-lyase_II CDD 408 507
IPR013784 Carb-bd-like_fold SUPERFAMILY 438 505
IPR029413 RG-lyase_II Pfam 431 502
IPR008979 Galactose-bd-like_sf SUPERFAMILY 514 710
IPR029413 RG-lyase_II CDD 408 507
IPR011013 Gal_mutarotase_sf_dom SUPERFAMILY 76 373
IPR029411 RG-lyase_III Pfam 517 709
IPR010325 Rhamnogal_lyase Pfam 64 278
IPR029413 RG-lyase_II Pfam 431 502
IPR008979 Galactose-bd-like_sf SUPERFAMILY 514 710
IPR014718 GH-type_carb-bd Gene3D 69 378
IPR013784 Carb-bd-like_fold SUPERFAMILY 438 505

No CAZYmes available for this sequence

No external refs found!