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  5. Zm00001d049260_T001

Zm00001d049260_T001


Description : long chain base2


Gene families : OG_01_0001135 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001135_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049260_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049260_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_313
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
BP GO:0009058 biosynthetic process ISM GOs from InterProScan
MF GO:0016740 transferase activity ISM GOs from InterProScan
MF GO:0030170 pyridoxal phosphate binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015424 PyrdxlP-dep_Trfase SUPERFAMILY 91 465
IPR004839 Aminotransferase_I/II Pfam 101 460
IPR015422 PyrdxlP-dep_Trfase_small Gene3D 97 460
IPR001917 Aminotrans_II_pyridoxalP_BS ProSitePatterns 308 317
IPR015421 PyrdxlP-dep_Trfase_major Gene3D 117 367
IPR001917 Aminotrans_II_pyridoxalP_BS ProSitePatterns 308 317
IPR015421 PyrdxlP-dep_Trfase_major Gene3D 117 367
IPR015424 PyrdxlP-dep_Trfase SUPERFAMILY 91 465
IPR004839 Aminotransferase_I/II Pfam 100 460
IPR015422 PyrdxlP-dep_Trfase_small Gene3D 97 460

No CAZYmes available for this sequence

No external refs found!