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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0008362 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008362_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049408_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049408_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_38 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_300 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 219 | 284 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 308 | 459 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 294 | 324 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 328 | 360 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 223 | 255 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 326 | 360 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 291 | 325 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 223 | 252 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 83 | 111 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 290 | 339 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 138 | 194 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 36 | 218 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 220 | 254 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 220 | 254 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 219 | 284 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 36 | 218 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 83 | 111 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 223 | 252 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 328 | 356 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 223 | 255 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 328 | 360 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 294 | 324 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 326 | 360 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 291 | 325 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 138 | 194 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 287 | 318 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 308 | 459 |
No CAZYmes available for this sequence
| No external refs found! |