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  5. Zm00001d049649_T001

Zm00001d049649_T001


Description : succinate dehydrogenase 2-2


Gene families : OG_01_0005670 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005670_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049649_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049649_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_196
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_130


Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISM GOs from InterProScan
CC GO:0005840 ribosome ISM GOs from InterProScan
BP GO:0006099 tricarboxylic acid cycle ISM GOs from InterProScan
BP GO:0006412 translation ISM GOs from InterProScan
MF GO:0009055 electron transfer activity ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
MF GO:0051536 iron-sulfur cluster binding ISM GOs from InterProScan
MF GO:0051537 2 iron, 2 sulfur cluster binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001209 Ribosomal_uS14 Pfam 294 347
IPR043140 Ribosomal_uS14_sf Gene3D 288 348
IPR017896 4Fe4S_Fe-S-bd ProSiteProfiles 182 212
IPR001041 2Fe-2S_ferredoxin-type ProSiteProfiles 47 139
IPR009051 Helical_ferredxn Gene3D 149 264
IPR004489 Succ_DH/fum_Rdtase_Fe-S NCBIfam 51 224
IPR036010 2Fe-2S_ferredoxin-like_sf SUPERFAMILY 46 148
IPR018271 Ribosomal_uS14_CS ProSitePatterns 310 332
IPR006058 2Fe2S_fd_BS ProSitePatterns 100 108
IPR017900 4Fe4S_Fe_S_CS ProSitePatterns 192 203
IPR012675 Beta-grasp_dom_sf Gene3D 39 148
IPR025192 Succ_DH/fum_Rdtase_N Pfam 48 153
IPR001041 2Fe-2S_ferredoxin-type CDD 79 113
IPR017900 4Fe4S_Fe_S_CS ProSitePatterns 192 203
IPR001209 Ribosomal_uS14 Pfam 294 347
IPR025192 Succ_DH/fum_Rdtase_N Pfam 48 153
IPR006058 2Fe2S_fd_BS ProSitePatterns 100 108
IPR036010 2Fe-2S_ferredoxin-like_sf SUPERFAMILY 46 148
IPR018271 Ribosomal_uS14_CS ProSitePatterns 310 332
IPR012675 Beta-grasp_dom_sf Gene3D 39 148
IPR004489 Succ_DH/fum_Rdtase_Fe-S TIGRFAM 51 224
IPR001041 2Fe-2S_ferredoxin-type CDD 79 113
IPR001041 2Fe-2S_ferredoxin-type ProSiteProfiles 47 139
IPR017896 4Fe4S_Fe-S-bd ProSiteProfiles 182 212
IPR043140 Ribosomal_uS14_sf Gene3D 288 348
IPR009051 Helical_ferredxn Gene3D 149 264

No CAZYmes available for this sequence

No external refs found!