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Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG_01_0001855 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001855_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049680_T005 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049680_T005 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_206 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_249 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 277 | 386 |
| IPR000504 | RRM_dom | ProSiteProfiles | 185 | 267 |
| IPR000504 | RRM_dom | ProSiteProfiles | 281 | 358 |
| IPR000504 | RRM_dom | SMART | 282 | 354 |
| IPR000504 | RRM_dom | SMART | 186 | 263 |
| IPR000504 | RRM_dom | SMART | 106 | 179 |
| IPR000504 | RRM_dom | Pfam | 187 | 250 |
| IPR000504 | RRM_dom | Pfam | 283 | 351 |
| IPR000504 | RRM_dom | Pfam | 107 | 177 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 186 | 266 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 2 | 185 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 102 | 269 |
| IPR003954 | RRM_dom_euk | SMART | 282 | 354 |
| IPR003954 | RRM_dom_euk | SMART | 186 | 263 |
| IPR003954 | RRM_dom_euk | SMART | 106 | 179 |
| IPR000504 | RRM_dom | ProSiteProfiles | 105 | 183 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 268 | 402 |
| IPR000504 | RRM_dom | SMART | 282 | 354 |
| IPR000504 | RRM_dom | SMART | 186 | 263 |
| IPR000504 | RRM_dom | SMART | 106 | 179 |
| IPR000504 | RRM_dom | ProSiteProfiles | 105 | 183 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 2 | 185 |
| IPR000504 | RRM_dom | Pfam | 283 | 351 |
| IPR000504 | RRM_dom | Pfam | 187 | 250 |
| IPR000504 | RRM_dom | Pfam | 107 | 177 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 268 | 402 |
| IPR000504 | RRM_dom | ProSiteProfiles | 185 | 267 |
| IPR000504 | RRM_dom | ProSiteProfiles | 281 | 358 |
| IPR003954 | RRM_dom_euk | SMART | 282 | 354 |
| IPR003954 | RRM_dom_euk | SMART | 186 | 263 |
| IPR003954 | RRM_dom_euk | SMART | 106 | 179 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 186 | 266 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 102 | 269 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 277 | 386 |
No CAZYmes available for this sequence
| No external refs found! |