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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0006781 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006781_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049796_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049796_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_182 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_276 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 213 | 247 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 146 | 175 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 178 | 212 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 89 | 252 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 336 | 454 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 318 | 352 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 353 | 387 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 143 | 177 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 180 | 225 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 357 | 400 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 282 | 331 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 253 | 335 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 388 | 422 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 286 | 319 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 356 | 388 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 391 | 422 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 146 | 176 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 181 | 213 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 283 | 317 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 318 | 352 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 353 | 387 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 253 | 335 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 143 | 177 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 283 | 317 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 146 | 176 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 391 | 422 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 356 | 388 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 181 | 213 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 286 | 319 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 213 | 247 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 89 | 252 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 336 | 454 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 146 | 175 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 388 | 422 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 178 | 212 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 180 | 225 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 282 | 331 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 357 | 400 |
No CAZYmes available for this sequence
| No external refs found! |