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  5. Zm00001d049980_T001

Zm00001d049980_T001


Description : RNA helicase family protein


Gene families : OG_01_0003218 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003218_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d049980_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d049980_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_122


Type GO Term Name Evidence Source
MF GO:0004386 helicase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014001 Helicase_ATP-bd SMART 211 395
IPR001650 Helicase_C Pfam 414 543
IPR014001 Helicase_ATP-bd ProSiteProfiles 223 386
IPR048333 HA2_WH Pfam 605 633
IPR002464 DNA/RNA_helicase_DEAH_CS ProSitePatterns 328 337
IPR027417 P-loop_NTPase Gene3D 389 564
IPR027417 P-loop_NTPase Gene3D 172 388
IPR007502 Helicase-assoc_dom SMART 604 696
IPR027417 P-loop_NTPase SUPERFAMILY 203 697
IPR001650 Helicase_C ProSiteProfiles 411 584
IPR001650 Helicase_C SMART 435 543
IPR011545 DEAD/DEAH_box_helicase_dom Pfam 223 371
IPR002464 DNA/RNA_helicase_DEAH_CS ProSitePatterns 328 337
IPR027417 P-loop_NTPase Gene3D 172 388
IPR014001 Helicase_ATP-bd SMART 211 395
IPR001650 Helicase_C ProSiteProfiles 411 584
IPR014001 Helicase_ATP-bd ProSiteProfiles 223 386
IPR027417 P-loop_NTPase Gene3D 389 564
IPR007502 Helicase-assoc_dom Pfam 605 677
IPR007502 Helicase-assoc_dom SMART 604 696
IPR027417 P-loop_NTPase SUPERFAMILY 203 697
IPR001650 Helicase_C SMART 435 543
IPR001650 Helicase_C Pfam 415 543

No CAZYmes available for this sequence

No external refs found!