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  5. Zm00001d050137_T002

Zm00001d050137_T002


Description : CCAAT-binding factor


Gene families : OG_01_0152831 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0152831_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d050137_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d050137_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_88
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_351


Type GO Term Name Evidence Source
BP GO:0000469 obsolete cleavage involved in rRNA processing ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0004540 RNA nuclease activity ISM GOs from InterProScan
BP GO:0042254 ribosome biogenesis ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012340 NA-bd_OB-fold SUPERFAMILY 159 197
IPR027193 Noc4 PANTHER 27 111
IPR009292 RRP36 Pfam 106 167
IPR001900 RNase_II/R Pfam 133 182
IPR005612 CCAAT-binding_factor Pfam 61 105
IPR001900 RNase_II/R Pfam 135 182
IPR027193 Noc4 PANTHER 25 111
IPR009292 RRP36 Pfam 107 168
IPR012340 NA-bd_OB-fold SUPERFAMILY 159 197
IPR005612 CCAAT-binding_factor Pfam 61 109

No CAZYmes available for this sequence

No external refs found!