1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d050157_T001

Zm00001d050157_T001


Description : putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain


Gene families : OG_01_0007517 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007517_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d050157_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d050157_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_293
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_239


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036236 Znf_C2H2_sf SUPERFAMILY 168 212
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 337 371
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 265 299
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 491 525
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 178 212
IPR013087 Znf_C2H2_type SMART 494 518
IPR013087 Znf_C2H2_type SMART 340 364
IPR013087 Znf_C2H2_type SMART 181 205
IPR013087 Znf_C2H2_type SMART 268 292
IPR013087 Znf_C2H2_type Pfam 342 364
IPR013087 Znf_C2H2_type Pfam 181 205
IPR013087 Znf_C2H2_type Pfam 495 518
IPR013087 Znf_C2H2_type Pfam 270 292
IPR036236 Znf_C2H2_sf SUPERFAMILY 317 368
IPR036236 Znf_C2H2_sf SUPERFAMILY 257 296
IPR036236 Znf_C2H2_sf SUPERFAMILY 486 522
IPR036236 Znf_C2H2_sf SUPERFAMILY 257 296
IPR036236 Znf_C2H2_sf SUPERFAMILY 317 368
IPR036236 Znf_C2H2_sf SUPERFAMILY 486 522
IPR036236 Znf_C2H2_sf SUPERFAMILY 168 212
IPR013087 Znf_C2H2_type SMART 494 518
IPR013087 Znf_C2H2_type SMART 181 205
IPR013087 Znf_C2H2_type SMART 340 364
IPR013087 Znf_C2H2_type SMART 268 292
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 337 371
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 265 299
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 491 525
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 178 212

No CAZYmes available for this sequence

No external refs found!