Zm00001d050162_T001

Description : phytochrome A

Gene families : OG_01_0067187 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0067187_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d050162_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d050162_T001	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_111

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	ISM	GOs from InterProScan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001294	Phytochrome	PRINTS	35	50
IPR001294	Phytochrome	PRINTS	16	32
IPR000014	PAS	NCBIfam	20	85
IPR035965	PAS-like_dom_sf	SUPERFAMILY	18	82
IPR000014	PAS	CDD	28	94
IPR000014	PAS	SMART	15	81
IPR000014	PAS	ProSiteProfiles	13	83
IPR013767	PAS_fold	Pfam	16	106
IPR001294	Phytochrome	PRINTS	35	50
IPR001294	Phytochrome	PRINTS	16	32
IPR013767	PAS_fold	Pfam	16	111
IPR000014	PAS	SMART	15	81
IPR000014	PAS	CDD	28	94
IPR000014	PAS	TIGRFAM	20	85
IPR000014	PAS	ProSiteProfiles	13	83
IPR035965	PAS-like_dom_sf	SUPERFAMILY	18	82

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d050162_T001

Expression Profile

Co-expression Networks

Functional Annotation