Zm00001d050316_T035

Description : splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein

Gene families : OG_01_0004357 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004357_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d050316_T035
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d050316_T035
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_239

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000504	RRM_dom	ProSiteProfiles	216	294
IPR000504	RRM_dom	SMART	217	290
IPR002483	PWI_dom	Pfam	816	879
IPR002483	PWI_dom	SMART	809	882
IPR000504	RRM_dom	Pfam	218	287
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	211	319
IPR035979	RBD_domain_sf	SUPERFAMILY	201	294
IPR034268	RBM25_RRM	CDD	216	299
IPR002483	PWI_dom	ProSiteProfiles	796	892
IPR036483	PWI_dom_sf	SUPERFAMILY	815	881
IPR000504	RRM_dom	SMART	217	290
IPR002483	PWI_dom	Pfam	816	879
IPR002483	PWI_dom	ProSiteProfiles	796	892
IPR034268	RBM25_RRM	CDD	216	299
IPR000504	RRM_dom	Pfam	218	287
IPR036483	PWI_dom_sf	SUPERFAMILY	815	881
IPR002483	PWI_dom	SMART	809	882
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	211	319
IPR000504	RRM_dom	ProSiteProfiles	216	294
IPR035979	RBD_domain_sf	SUPERFAMILY	201	294

No CAZYmes available for this sequence

External Links

No external refs found!