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  5. Zm00001d050642_T001

Zm00001d050642_T001


Description : DNA/RNA helicase protein


Gene families : OG_01_0005166 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005166_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d050642_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d050642_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_145
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_249


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides ISM GOs from InterProScan
MF GO:0140658 ATP-dependent chromatin remodeler activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014905 HIRAN Pfam 116 216
IPR014905 HIRAN SMART 112 220
IPR000330 SNF2_N Pfam 339 577
IPR027417 P-loop_NTPase SUPERFAMILY 324 577
IPR014001 Helicase_ATP-bd SMART 332 578
IPR038718 SNF2-like_sf Gene3D 318 578
IPR014001 Helicase_ATP-bd ProSiteProfiles 360 572
IPR000330 SNF2_N Pfam 339 576
IPR014001 Helicase_ATP-bd ProSiteProfiles 360 572
IPR014001 Helicase_ATP-bd SMART 332 578
IPR014905 HIRAN SMART 112 220
IPR038718 SNF2-like_sf Gene3D 318 578
IPR014905 HIRAN Pfam 116 216
IPR027417 P-loop_NTPase SUPERFAMILY 324 577

No CAZYmes available for this sequence

No external refs found!