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  5. Zm00001d050822_T008

Zm00001d050822_T008


Description : ATP-dependent Clp protease


Gene families : OG_01_0000248 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000248_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d050822_T008
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d050822_T008
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_39
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_105


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006457 protein folding ISM GOs from InterProScan
MF GO:0016887 ATP hydrolysis activity ISM GOs from InterProScan
MF GO:0051082 unfolded protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003959 ATPase_AAA_core Pfam 288 492
IPR019489 Clp_ATPase_C Pfam 499 569
IPR027417 P-loop_NTPase SUPERFAMILY 222 585
IPR027417 P-loop_NTPase Gene3D 218 497
IPR019489 Clp_ATPase_C SMART 499 592
IPR004487 Clp_protease_ATP-bd_su_ClpX NCBIfam 221 591
IPR003593 AAA+_ATPase SMART 288 450
IPR004487 Clp_protease_ATP-bd_su_ClpX TIGRFAM 221 591
IPR027417 P-loop_NTPase Gene3D 218 497
IPR019489 Clp_ATPase_C SMART 499 592
IPR003959 ATPase_AAA_core Pfam 288 492
IPR019489 Clp_ATPase_C Pfam 499 570
IPR003593 AAA+_ATPase SMART 288 450
IPR027417 P-loop_NTPase SUPERFAMILY 222 585

No CAZYmes available for this sequence

No external refs found!