Zm00001d051697_T001

Description : nuclear factor Y, subunit B6

Gene families : OG_01_0040865 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0040865_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d051697_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d051697_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_174

Type	GO Term	Name	Evidence	Source
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	None	Extended
MF	GO:0001216	DNA-binding transcription activator activity	None	Extended
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
CC	GO:0005667	transcription regulator complex	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016602	CCAAT-binding factor complex	ISM	GOs from InterProScan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	ISM	GOs from InterProScan
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027113	Transc_fact_NFYB/HAP3	PANTHER	25	140
IPR003958	CBFA_NFYB_domain	Pfam	38	101
IPR003956	Transcrpt_fac_NFYB/HAP3_CS	ProSitePatterns	68	84
IPR009072	Histone-fold	Gene3D	26	134
IPR009072	Histone-fold	SUPERFAMILY	34	131
IPR003956	Transcrpt_fac_NFYB/HAP3_CS	ProSitePatterns	68	84
IPR009072	Histone-fold	SUPERFAMILY	34	131
IPR003958	CBFA_NFYB_domain	Pfam	38	101
IPR027113	Transc_fact_NFYB/HAP3	PANTHER	16	217
IPR009072	Histone-fold	Gene3D	26	134

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d051697_T001

Expression Profile

Co-expression Networks

Functional Annotation