Zm00001d052098_T011

Description : VIRE2 interacting protein 2

Gene families : OG_01_0000378 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000378_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052098_T011
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052098_T011
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_184
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_271

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0030015	CCR4-NOT core complex	ISM	GOs from InterProScan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007282	NOT2/3/5_C	Pfam	507	629
IPR040168	Not2/3/5	PANTHER	40	632
IPR038635	CCR4-NOT_su2/3/5_C_sf	Gene3D	462	642
IPR007282	NOT2/3/5_C	Pfam	508	629
IPR040168	Not2/3/5	PANTHER	33	641
IPR038635	CCR4-NOT_su2/3/5_C_sf	Gene3D	462	642

No CAZYmes available for this sequence

External Links

No external refs found!