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  5. Zm00001d052103_T001

Zm00001d052103_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0013648 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013648_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052103_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052103_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_42
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 Pfam 167 454
IPR012334 Pectin_lyas_fold Gene3D 66 456
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 68 468
IPR006626 PbH1 SMART 244 271
IPR006626 PbH1 SMART 306 328
IPR006626 PbH1 SMART 272 293
IPR006626 PbH1 SMART 334 355
IPR006626 PbH1 SMART 363 384
IPR012334 Pectin_lyas_fold Gene3D 66 456
IPR000743 Glyco_hydro_28 Pfam 165 454
IPR006626 PbH1 SMART 244 271
IPR006626 PbH1 SMART 306 328
IPR006626 PbH1 SMART 272 293
IPR006626 PbH1 SMART 334 355
IPR006626 PbH1 SMART 363 384
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 68 468
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 496 5.1e-89 108 455
No external refs found!