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  5. Zm00001d052247_T001

Zm00001d052247_T001


Description : shikimate kinase 1


Gene families : OG_01_0003242 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003242_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052247_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052247_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_300
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_172


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027417 P-loop_NTPase Gene3D 75 289
IPR000623 Shikimate_kinase/TSH1 CDD 94 254
IPR000623 Shikimate_kinase/TSH1 Hamap 91 264
IPR023000 Shikimate_kinase_CS ProSitePatterns 148 173
IPR027417 P-loop_NTPase SUPERFAMILY 92 214
IPR031322 Shikimate/glucono_kinase Pfam 100 253
IPR023000 Shikimate_kinase_CS ProSitePatterns 148 173
IPR000623 Shikimate_kinase/TSH1 CDD 94 254
IPR031322 Shikimate/glucono_kinase Pfam 100 253
IPR027417 P-loop_NTPase Gene3D 75 289
IPR027417 P-loop_NTPase SUPERFAMILY 92 214
IPR000623 Shikimate_kinase/TSH1 Hamap 91 264

No CAZYmes available for this sequence

No external refs found!