Zm00001d052288_T001

Description : DP-E2F-like 1

Gene families : OG_01_0021301 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0021301_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052288_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052288_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_94
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_6

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	ISM	GOs from InterProScan
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006357	regulation of transcription by RNA polymerase II	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036388	WH-like_DNA-bd_sf	Gene3D	198	285
IPR036388	WH-like_DNA-bd_sf	Gene3D	54	127
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	58	123
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	205	284
IPR015633	E2F	PANTHER	50	405
IPR003316	E2F_WHTH_DNA-bd_dom	SMART	203	283
IPR003316	E2F_WHTH_DNA-bd_dom	SMART	59	124
IPR003316	E2F_WHTH_DNA-bd_dom	Pfam	204	283
IPR003316	E2F_WHTH_DNA-bd_dom	Pfam	60	124
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	58	123
IPR003316	E2F_WHTH_DNA-bd_dom	SMART	203	283
IPR003316	E2F_WHTH_DNA-bd_dom	SMART	59	124
IPR003316	E2F_WHTH_DNA-bd_dom	Pfam	204	283
IPR003316	E2F_WHTH_DNA-bd_dom	Pfam	60	124
IPR015633	E2F	PANTHER	14	420
IPR036388	WH-like_DNA-bd_sf	Gene3D	198	285
IPR036388	WH-like_DNA-bd_sf	Gene3D	54	127
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	205	284

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d052288_T001

Expression Profile

Co-expression Networks

Functional Annotation