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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0009410 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009410_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052396_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052396_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_206 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_185 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 137 | 171 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 405 | 440 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 238 | 268 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 269 | 303 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 202 | 324 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 271 | 304 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 139 | 172 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 243 | 271 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 407 | 440 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 372 | 406 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 341 | 556 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 48 | 201 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 212 | 238 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 444 | 469 |
| IPR046848 | E_motif | Pfam | 487 | 549 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 370 | 404 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 369 | 418 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 136 | 173 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 268 | 317 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 407 | 440 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 243 | 271 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 139 | 172 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 271 | 304 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 406 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 268 | 317 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 136 | 173 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 369 | 418 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 370 | 404 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 212 | 238 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 444 | 469 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 238 | 268 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 405 | 440 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 341 | 556 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 48 | 201 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 269 | 303 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 137 | 171 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 202 | 324 |
No CAZYmes available for this sequence
| No external refs found! |