1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d052450_T001

Zm00001d052450_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0003675 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003675_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052450_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052450_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_169


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 602 636
IPR001345 PG/BPGM_mutase_AS ProSitePatterns 22 31
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 637 671
IPR013078 His_Pase_superF_clade-1 CDD 19 170
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 811 845
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 462 496
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 532 566
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 672 706
IPR002885 Pentatricopeptide_rpt Pfam 396 421
IPR002885 Pentatricopeptide_rpt Pfam 640 668
IPR013078 His_Pase_superF_clade-1 SMART 19 145
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 776 810
IPR002885 Pentatricopeptide_rpt Pfam 527 560
IPR002885 Pentatricopeptide_rpt NCBIfam 778 812
IPR002885 Pentatricopeptide_rpt NCBIfam 465 497
IPR002885 Pentatricopeptide_rpt NCBIfam 535 568
IPR002885 Pentatricopeptide_rpt NCBIfam 934 966
IPR002885 Pentatricopeptide_rpt NCBIfam 813 847
IPR002885 Pentatricopeptide_rpt NCBIfam 675 707
IPR002885 Pentatricopeptide_rpt NCBIfam 743 777
IPR002885 Pentatricopeptide_rpt NCBIfam 499 533
IPR002885 Pentatricopeptide_rpt NCBIfam 569 602
IPR002885 Pentatricopeptide_rpt NCBIfam 710 737
IPR002885 Pentatricopeptide_rpt NCBIfam 605 637
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 931 965
IPR029033 His_PPase_superfam SUPERFAMILY 18 184
IPR029033 His_PPase_superfam Gene3D 8 54
IPR011990 TPR-like_helical_dom_sf Gene3D 454 547
IPR011990 TPR-like_helical_dom_sf Gene3D 548 690
IPR002885 Pentatricopeptide_rpt Pfam 798 856
IPR002885 Pentatricopeptide_rpt Pfam 740 789
IPR002885 Pentatricopeptide_rpt Pfam 930 977
IPR002885 Pentatricopeptide_rpt Pfam 671 720
IPR002885 Pentatricopeptide_rpt Pfam 461 506
IPR002885 Pentatricopeptide_rpt Pfam 566 614
IPR029033 His_PPase_superfam Gene3D 55 186
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 707 737
IPR011990 TPR-like_helical_dom_sf Gene3D 699 767
IPR011990 TPR-like_helical_dom_sf Gene3D 839 909
IPR011990 TPR-like_helical_dom_sf Gene3D 768 838
IPR011990 TPR-like_helical_dom_sf Gene3D 910 1023
IPR011990 TPR-like_helical_dom_sf Gene3D 285 453
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 741 775
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 497 531
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 567 601
IPR013078 His_Pase_superF_clade-1 Pfam 55 183
IPR013078 His_Pase_superF_clade-1 Pfam 21 52
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 846 880
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 672 706
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 811 845
IPR029033 His_PPase_superfam Gene3D 8 54
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 462 496
IPR029033 His_PPase_superfam Gene3D 55 186
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 497 531
IPR002885 Pentatricopeptide_rpt Pfam 640 668
IPR002885 Pentatricopeptide_rpt Pfam 396 421
IPR011990 TPR-like_helical_dom_sf Gene3D 454 547
IPR011990 TPR-like_helical_dom_sf Gene3D 548 690
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 846 880
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 567 601
IPR029033 His_PPase_superfam SUPERFAMILY 18 184
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 532 566
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 637 671
IPR001345 PG/BPGM_mutase_AS ProSitePatterns 22 31
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 741 775
IPR002885 Pentatricopeptide_rpt TIGRFAM 569 602
IPR002885 Pentatricopeptide_rpt TIGRFAM 499 533
IPR002885 Pentatricopeptide_rpt TIGRFAM 778 812
IPR002885 Pentatricopeptide_rpt TIGRFAM 813 847
IPR002885 Pentatricopeptide_rpt TIGRFAM 710 737
IPR002885 Pentatricopeptide_rpt TIGRFAM 396 422
IPR002885 Pentatricopeptide_rpt TIGRFAM 535 568
IPR002885 Pentatricopeptide_rpt TIGRFAM 465 497
IPR002885 Pentatricopeptide_rpt TIGRFAM 675 707
IPR002885 Pentatricopeptide_rpt TIGRFAM 605 637
IPR002885 Pentatricopeptide_rpt TIGRFAM 743 777
IPR002885 Pentatricopeptide_rpt TIGRFAM 934 966
IPR013078 His_Pase_superF_clade-1 Pfam 20 52
IPR013078 His_Pase_superF_clade-1 Pfam 55 183
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 707 737
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 931 965
IPR013078 His_Pase_superF_clade-1 SMART 19 145
IPR002885 Pentatricopeptide_rpt Pfam 458 490
IPR011990 TPR-like_helical_dom_sf Gene3D 910 1023
IPR011990 TPR-like_helical_dom_sf Gene3D 285 453
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 602 636
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 776 810
IPR013078 His_Pase_superF_clade-1 CDD 19 170
IPR002885 Pentatricopeptide_rpt Pfam 496 545
IPR002885 Pentatricopeptide_rpt Pfam 671 711
IPR002885 Pentatricopeptide_rpt Pfam 931 978
IPR002885 Pentatricopeptide_rpt Pfam 810 854
IPR002885 Pentatricopeptide_rpt Pfam 566 614
IPR002885 Pentatricopeptide_rpt Pfam 740 789
IPR011990 TPR-like_helical_dom_sf Gene3D 699 767
IPR011990 TPR-like_helical_dom_sf Gene3D 839 909
IPR011990 TPR-like_helical_dom_sf Gene3D 768 838

No CAZYmes available for this sequence

No external refs found!