Zm00001d052588_T001

Description : histone H2A 11

Gene families : OG_01_0004669 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004669_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052588_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052588_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_121
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_56

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002119	Histone_H2A	CDD	99	193
IPR002119	Histone_H2A	SMART	81	197
IPR003891	Initiation_fac_eIF4g_MI	ProSiteProfiles	1	56
IPR002119	Histone_H2A	PRINTS	174	192
IPR002119	Histone_H2A	PRINTS	88	110
IPR002119	Histone_H2A	PRINTS	118	133
IPR002119	Histone_H2A	PRINTS	133	146
IPR002119	Histone_H2A	PRINTS	147	161
IPR032454	Histone_H2A_C	Pfam	167	196
IPR009072	Histone-fold	SUPERFAMILY	98	174
IPR007125	Histone_H2A/H2B/H3	Pfam	83	165
IPR002119	Histone_H2A	PANTHER	91	194
IPR016024	ARM-type_fold	SUPERFAMILY	8	56
IPR009072	Histone-fold	Gene3D	93	197
IPR009072	Histone-fold	Gene3D	93	197
IPR002119	Histone_H2A	PANTHER	78	195
IPR007125	Histone_H2A/H2B/H3	Pfam	83	165
IPR003891	Initiation_fac_eIF4g_MI	ProSiteProfiles	1	56
IPR009072	Histone-fold	SUPERFAMILY	98	174
IPR016024	ARM-type_fold	SUPERFAMILY	8	56
IPR002119	Histone_H2A	SMART	81	197
IPR002119	Histone_H2A	CDD	99	193
IPR032454	Histone_H2A_C	Pfam	167	196
IPR002119	Histone_H2A	PRINTS	174	192
IPR002119	Histone_H2A	PRINTS	88	110
IPR002119	Histone_H2A	PRINTS	118	133
IPR002119	Histone_H2A	PRINTS	133	146
IPR002119	Histone_H2A	PRINTS	147	161

No CAZYmes available for this sequence

External Links

No external refs found!