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  5. Zm00001d052820_T001

Zm00001d052820_T001


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0008007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008007_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052820_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052820_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom SMART 116 189
IPR000504 RRM_dom SMART 26 97
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 104 280
IPR000504 RRM_dom ProSiteProfiles 25 101
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 25 103
IPR000504 RRM_dom ProSiteProfiles 115 193
IPR000504 RRM_dom Pfam 117 174
IPR000504 RRM_dom Pfam 27 94
IPR035979 RBD_domain_sf SUPERFAMILY 115 265
IPR035979 RBD_domain_sf SUPERFAMILY 23 106
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 25 103
IPR000504 RRM_dom SMART 116 189
IPR000504 RRM_dom SMART 26 97
IPR035979 RBD_domain_sf SUPERFAMILY 115 265
IPR000504 RRM_dom Pfam 117 175
IPR000504 RRM_dom Pfam 27 94
IPR000504 RRM_dom ProSiteProfiles 115 193
IPR000504 RRM_dom ProSiteProfiles 25 101
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 104 280
IPR035979 RBD_domain_sf SUPERFAMILY 23 106

No CAZYmes available for this sequence

No external refs found!