Zm00001d052943_T023

Description : ubiquitin-specific protease 12

Gene families : OG_01_0000079 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000079_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052943_T023
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052943_T023
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_249

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0016579	protein deubiquitination	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002083	MATH/TRAF_dom	CDD	116	232
IPR002083	MATH/TRAF_dom	SMART	116	220
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	254	644
IPR001394	Peptidase_C19_UCH	Pfam	259	614
IPR008974	TRAF-like	Gene3D	112	255
IPR028889	USP_dom	ProSiteProfiles	259	617
IPR029346	USP_C	Pfam	895	1104
IPR024729	USP7_ICP0-binding_dom	Pfam	807	880
IPR024729	USP7_ICP0-binding_dom	Pfam	718	800
IPR002083	MATH/TRAF_dom	Pfam	121	241
IPR018200	USP_CS	ProSitePatterns	260	275
IPR002083	MATH/TRAF_dom	ProSiteProfiles	114	239
IPR008974	TRAF-like	Gene3D	112	255
IPR024729	USP7_ICP0-binding_dom	Pfam	718	800
IPR024729	USP7_ICP0-binding_dom	Pfam	807	880
IPR018200	USP_CS	ProSitePatterns	260	275
IPR002083	MATH/TRAF_dom	Pfam	121	241
IPR001394	Peptidase_C19_UCH	Pfam	259	614
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	254	644
IPR002083	MATH/TRAF_dom	CDD	116	232
IPR002083	MATH/TRAF_dom	SMART	116	220
IPR028889	USP_dom	ProSiteProfiles	259	617
IPR029346	USP_C	Pfam	895	1104
IPR002083	MATH/TRAF_dom	ProSiteProfiles	114	239

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d052943_T023

Expression Profile

Co-expression Networks

Functional Annotation