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  5. Zm00001d052948_T001

Zm00001d052948_T001


Description : TCP-1/cpn60 chaperonin family protein


Gene families : OG_01_0000936 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000936_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052948_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052948_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_107


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006457 protein folding ISM GOs from InterProScan
MF GO:0016887 ATP hydrolysis activity ISM GOs from InterProScan
MF GO:0051082 unfolded protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027410 TCP-1-like_intermed_sf Gene3D 150 410
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 66 82
IPR012721 Chap_CCT_theta CDD 21 530
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 45 57
IPR027409 GroEL-like_apical_dom_sf Gene3D 223 374
IPR027409 GroEL-like_apical_dom_sf SUPERFAMILY 219 383
IPR027410 TCP-1-like_intermed_sf SUPERFAMILY 159 410
IPR017998 Chaperone_TCP-1 PRINTS 64 82
IPR017998 Chaperone_TCP-1 PRINTS 412 424
IPR017998 Chaperone_TCP-1 PRINTS 42 58
IPR017998 Chaperone_TCP-1 PRINTS 378 400
IPR017998 Chaperone_TCP-1 PRINTS 94 113
IPR012721 Chap_CCT_theta NCBIfam 11 540
IPR027413 GROEL-like_equatorial_sf Gene3D 37 528
IPR017998 Chaperone_TCP-1 PANTHER 27 530
IPR027413 GROEL-like_equatorial_sf SUPERFAMILY 24 531
IPR002423 Cpn60/GroEL/TCP-1 Pfam 40 531
IPR027413 GROEL-like_equatorial_sf Gene3D 37 528
IPR012721 Chap_CCT_theta CDD 21 530
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 45 57
IPR027410 TCP-1-like_intermed_sf Gene3D 150 410
IPR027410 TCP-1-like_intermed_sf SUPERFAMILY 159 410
IPR027409 GroEL-like_apical_dom_sf SUPERFAMILY 219 383
IPR017998 Chaperone_TCP-1 PRINTS 64 82
IPR017998 Chaperone_TCP-1 PRINTS 412 424
IPR017998 Chaperone_TCP-1 PRINTS 42 58
IPR017998 Chaperone_TCP-1 PRINTS 378 400
IPR017998 Chaperone_TCP-1 PRINTS 94 113
IPR017998 Chaperone_TCP-1 PANTHER 13 539
IPR002423 Cpn60/GroEL/TCP-1 Pfam 40 531
IPR012721 Chap_CCT_theta TIGRFAM 11 540
IPR002194 Chaperonin_TCP-1_CS ProSitePatterns 66 82
IPR027409 GroEL-like_apical_dom_sf Gene3D 223 374
IPR027413 GROEL-like_equatorial_sf SUPERFAMILY 24 531

No CAZYmes available for this sequence

No external refs found!