Zm00001d052952_T001

Description : H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

Gene families : OG_01_0014410 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014410_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052952_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052952_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_45

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR038664	Gar1/Naf1_Cbf5-bd_sf	Gene3D	47	138
IPR009000	Transl_B-barrel_sf	SUPERFAMILY	52	126
IPR007504	H/ACA_rnp_Gar1/Naf1	Pfam	51	137
IPR007504	H/ACA_rnp_Gar1/Naf1	Pfam	51	137
IPR038664	Gar1/Naf1_Cbf5-bd_sf	Gene3D	47	138
IPR009000	Transl_B-barrel_sf	SUPERFAMILY	52	126

No CAZYmes available for this sequence

External Links

No external refs found!