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  5. Zm00001d052953_T002

Zm00001d052953_T002


Description : pumilio 12


Gene families : OG_01_0018576 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018576_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d052953_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d052953_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_85
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_90


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001313 Pumilio_RNA-bd_rpt Pfam 467 501
IPR001313 Pumilio_RNA-bd_rpt Pfam 432 465
IPR001313 Pumilio_RNA-bd_rpt Pfam 691 717
IPR001313 Pumilio_RNA-bd_rpt Pfam 651 685
IPR001313 Pumilio_RNA-bd_rpt Pfam 580 613
IPR001313 Pumilio_RNA-bd_rpt Pfam 617 648
IPR001313 Pumilio_RNA-bd_rpt Pfam 547 574
IPR001313 Pumilio_RNA-bd_rpt Pfam 511 538
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 683 720
IPR033133 PUM-HD ProSiteProfiles 405 746
IPR016024 ARM-type_fold SUPERFAMILY 425 741
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 499 538
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 574 610
IPR011989 ARM-like Gene3D 412 749
IPR033712 Pumilio_RNA-bd CDD 430 742
IPR001313 Pumilio_RNA-bd_rpt SMART 611 646
IPR001313 Pumilio_RNA-bd_rpt SMART 685 720
IPR001313 Pumilio_RNA-bd_rpt SMART 427 462
IPR001313 Pumilio_RNA-bd_rpt SMART 463 498
IPR001313 Pumilio_RNA-bd_rpt SMART 502 538
IPR001313 Pumilio_RNA-bd_rpt SMART 647 682
IPR001313 Pumilio_RNA-bd_rpt SMART 539 574
IPR001313 Pumilio_RNA-bd_rpt SMART 575 610
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 463 498
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 427 462
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 611 646
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 647 682
IPR016024 ARM-type_fold SUPERFAMILY 425 741
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 574 610
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 427 462
IPR033712 Pumilio_RNA-bd CDD 430 742
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 611 646
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 499 538
IPR011989 ARM-like Gene3D 412 749
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 647 682
IPR001313 Pumilio_RNA-bd_rpt SMART 611 646
IPR001313 Pumilio_RNA-bd_rpt SMART 427 462
IPR001313 Pumilio_RNA-bd_rpt SMART 685 720
IPR001313 Pumilio_RNA-bd_rpt SMART 463 498
IPR001313 Pumilio_RNA-bd_rpt SMART 502 538
IPR001313 Pumilio_RNA-bd_rpt SMART 647 682
IPR001313 Pumilio_RNA-bd_rpt SMART 539 574
IPR001313 Pumilio_RNA-bd_rpt SMART 575 610
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 463 498
IPR033133 PUM-HD ProSiteProfiles 405 746
IPR001313 Pumilio_RNA-bd_rpt Pfam 691 716
IPR001313 Pumilio_RNA-bd_rpt Pfam 580 613
IPR001313 Pumilio_RNA-bd_rpt Pfam 617 648
IPR001313 Pumilio_RNA-bd_rpt Pfam 467 501
IPR001313 Pumilio_RNA-bd_rpt Pfam 431 465
IPR001313 Pumilio_RNA-bd_rpt Pfam 511 539
IPR001313 Pumilio_RNA-bd_rpt Pfam 547 574
IPR001313 Pumilio_RNA-bd_rpt Pfam 651 685
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 683 720

No CAZYmes available for this sequence

No external refs found!