1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d053265_T002

Zm00001d053265_T002


Description : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain


Gene families : OG_01_0007215 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007215_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d053265_T002 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d053265_T002
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_251


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036431 ARID_dom_sf SUPERFAMILY 55 158
IPR001606 ARID_dom ProSiteProfiles 59 150
IPR045303 ARID_HMGB9-like CDD 61 146
IPR036910 HMG_box_dom_sf Gene3D 255 346
IPR036431 ARID_dom_sf Gene3D 49 168
IPR009071 HMG_box_dom ProSiteProfiles 272 339
IPR001606 ARID_dom Pfam 63 146
IPR036910 HMG_box_dom_sf SUPERFAMILY 259 339
IPR001606 ARID_dom SMART 60 151
IPR009071 HMG_box_dom SMART 271 340
IPR009071 HMG_box_dom Pfam 272 339
IPR001606 ARID_dom ProSiteProfiles 59 150
IPR045303 ARID_HMGB9-like CDD 61 146
IPR036910 HMG_box_dom_sf Gene3D 255 346
IPR036910 HMG_box_dom_sf SUPERFAMILY 259 339
IPR036431 ARID_dom_sf SUPERFAMILY 55 158
IPR036431 ARID_dom_sf Gene3D 49 168
IPR001606 ARID_dom SMART 60 151
IPR001606 ARID_dom Pfam 64 146
IPR009071 HMG_box_dom ProSiteProfiles 272 339
IPR009071 HMG_box_dom Pfam 272 339
IPR009071 HMG_box_dom SMART 271 340

No CAZYmes available for this sequence

No external refs found!