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  5. Zm00001d053395_T001

Zm00001d053395_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0004808 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004808_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d053395_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d053395_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_200


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 Pfam 145 425
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 41 439
IPR012334 Pectin_lyas_fold Gene3D 29 436
IPR006626 PbH1 SMART 217 243
IPR006626 PbH1 SMART 244 276
IPR006626 PbH1 SMART 334 355
IPR006626 PbH1 SMART 278 299
IPR006626 PbH1 SMART 305 326
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 41 439
IPR000743 Glyco_hydro_28 Pfam 142 425
IPR006626 PbH1 SMART 217 243
IPR006626 PbH1 SMART 244 276
IPR006626 PbH1 SMART 334 355
IPR006626 PbH1 SMART 278 299
IPR006626 PbH1 SMART 305 326
IPR012334 Pectin_lyas_fold Gene3D 29 436
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 452 2.3e-80 80 426
No external refs found!