1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d053609_T011

Zm00001d053609_T011


Description : Coatomer, beta\' subunit


Gene families : OG_01_0000074 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000074_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d053609_T011
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d053609_T011
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_239


Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
CC GO:0030117 membrane coat ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 11 52
IPR016453 COPB2 PIRSF 2 894
IPR020472 G-protein_beta_WD-40_rep PRINTS 158 172
IPR020472 G-protein_beta_WD-40_rep PRINTS 244 258
IPR020472 G-protein_beta_WD-40_rep PRINTS 202 216
IPR006692 Coatomer_WD-assoc_reg Pfam 319 763
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 11 300
IPR001680 WD40_rpt ProSiteProfiles 181 224
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 4 297
IPR001680 WD40_rpt SMART 4 43
IPR001680 WD40_rpt SMART 131 171
IPR001680 WD40_rpt SMART 174 215
IPR001680 WD40_rpt SMART 218 257
IPR001680 WD40_rpt SMART 88 127
IPR001680 WD40_rpt SMART 46 85
IPR001680 WD40_rpt ProSiteProfiles 225 266
IPR001680 WD40_rpt ProSiteProfiles 95 127
IPR001680 WD40_rpt Pfam 91 127
IPR001680 WD40_rpt Pfam 133 171
IPR001680 WD40_rpt Pfam 16 43
IPR001680 WD40_rpt Pfam 220 256
IPR001680 WD40_rpt Pfam 177 215
IPR001680 WD40_rpt ProSiteProfiles 138 180
IPR006692 Coatomer_WD-assoc_reg Pfam 319 763
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 4 297
IPR001680 WD40_rpt Pfam 220 256
IPR001680 WD40_rpt Pfam 91 127
IPR001680 WD40_rpt Pfam 177 215
IPR001680 WD40_rpt Pfam 133 171
IPR001680 WD40_rpt ProSiteProfiles 225 266
IPR001680 WD40_rpt ProSiteProfiles 95 127
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 11 300
IPR020472 G-protein_beta_WD-40_rep PRINTS 158 172
IPR020472 G-protein_beta_WD-40_rep PRINTS 244 258
IPR020472 G-protein_beta_WD-40_rep PRINTS 202 216
IPR001680 WD40_rpt SMART 4 43
IPR001680 WD40_rpt SMART 131 171
IPR001680 WD40_rpt SMART 174 215
IPR001680 WD40_rpt SMART 218 257
IPR001680 WD40_rpt SMART 88 127
IPR001680 WD40_rpt SMART 46 85
IPR016453 COPB2 PIRSF 2 894
IPR001680 WD40_rpt ProSiteProfiles 11 52
IPR001680 WD40_rpt ProSiteProfiles 138 180
IPR001680 WD40_rpt ProSiteProfiles 181 224

No CAZYmes available for this sequence

No external refs found!