Zm00001d053611_T001

Description : SPOC domain / Transcription elongation factor S-II protein

Gene families : OG_01_0010093 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010093_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d053611_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d053611_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036575	TFIIS_cen_dom_sf	SUPERFAMILY	322	403
IPR003618	TFIIS_cen_dom	Pfam	325	414
IPR003618	TFIIS_cen_dom	ProSiteProfiles	317	427
IPR012921	SPOC_C	Pfam	670	815
IPR003618	TFIIS_cen_dom	SMART	315	410
IPR036575	TFIIS_cen_dom_sf	Gene3D	301	402
IPR003618	TFIIS_cen_dom	ProSiteProfiles	317	427
IPR036575	TFIIS_cen_dom_sf	SUPERFAMILY	322	403
IPR036575	TFIIS_cen_dom_sf	Gene3D	301	402
IPR003618	TFIIS_cen_dom	Pfam	322	414
IPR003618	TFIIS_cen_dom	SMART	315	410
IPR012921	SPOC_C	Pfam	671	814

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d053611_T001

Expression Profile

Co-expression Networks

Functional Annotation