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  5. Zm00001d053986_T001

Zm00001d053986_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010128 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010128_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d053986_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d053986_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_162


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314
IPR011990 TPR-like_helical_dom_sf Gene3D 683 818
IPR011990 TPR-like_helical_dom_sf Gene3D 18 204
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 144 178
IPR002885 Pentatricopeptide_rpt Pfam 459 486
IPR002885 Pentatricopeptide_rpt Pfam 726 751
IPR002885 Pentatricopeptide_rpt NCBIfam 586 619
IPR002885 Pentatricopeptide_rpt NCBIfam 208 242
IPR002885 Pentatricopeptide_rpt NCBIfam 422 456
IPR002885 Pentatricopeptide_rpt NCBIfam 387 420
IPR002885 Pentatricopeptide_rpt NCBIfam 178 208
IPR002885 Pentatricopeptide_rpt NCBIfam 515 549
IPR002885 Pentatricopeptide_rpt NCBIfam 459 486
IPR002885 Pentatricopeptide_rpt NCBIfam 243 271
IPR002885 Pentatricopeptide_rpt NCBIfam 621 654
IPR002885 Pentatricopeptide_rpt NCBIfam 318 350
IPR002885 Pentatricopeptide_rpt NCBIfam 550 583
IPR002885 Pentatricopeptide_rpt Pfam 510 540
IPR002885 Pentatricopeptide_rpt Pfam 140 171
IPR002885 Pentatricopeptide_rpt Pfam 279 308
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 513 547
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 618 652
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 583 617
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR011990 TPR-like_helical_dom_sf Gene3D 611 682
IPR011990 TPR-like_helical_dom_sf Gene3D 373 448
IPR011990 TPR-like_helical_dom_sf Gene3D 539 610
IPR011990 TPR-like_helical_dom_sf Gene3D 449 538
IPR011990 TPR-like_helical_dom_sf Gene3D 205 273
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR011990 TPR-like_helical_dom_sf Gene3D 274 372
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 548 582
IPR002885 Pentatricopeptide_rpt Pfam 206 254
IPR002885 Pentatricopeptide_rpt Pfam 617 666
IPR002885 Pentatricopeptide_rpt Pfam 384 431
IPR002885 Pentatricopeptide_rpt Pfam 547 594
IPR002885 Pentatricopeptide_rpt Pfam 316 363
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 241 271
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR011990 TPR-like_helical_dom_sf Gene3D 683 818
IPR011990 TPR-like_helical_dom_sf Gene3D 18 204
IPR002885 Pentatricopeptide_rpt Pfam 459 486
IPR002885 Pentatricopeptide_rpt Pfam 726 751
IPR002885 Pentatricopeptide_rpt Pfam 140 171
IPR002885 Pentatricopeptide_rpt Pfam 279 308
IPR002885 Pentatricopeptide_rpt Pfam 510 540
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 144 178
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 241 271
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR011990 TPR-like_helical_dom_sf Gene3D 274 372
IPR002885 Pentatricopeptide_rpt Pfam 617 666
IPR002885 Pentatricopeptide_rpt Pfam 384 431
IPR002885 Pentatricopeptide_rpt Pfam 316 363
IPR002885 Pentatricopeptide_rpt Pfam 206 254
IPR002885 Pentatricopeptide_rpt Pfam 547 594
IPR011990 TPR-like_helical_dom_sf Gene3D 611 682
IPR011990 TPR-like_helical_dom_sf Gene3D 373 448
IPR011990 TPR-like_helical_dom_sf Gene3D 539 610
IPR011990 TPR-like_helical_dom_sf Gene3D 449 538
IPR011990 TPR-like_helical_dom_sf Gene3D 205 273
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR002885 Pentatricopeptide_rpt TIGRFAM 422 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 621 654
IPR002885 Pentatricopeptide_rpt TIGRFAM 208 242
IPR002885 Pentatricopeptide_rpt TIGRFAM 550 583
IPR002885 Pentatricopeptide_rpt TIGRFAM 318 350
IPR002885 Pentatricopeptide_rpt TIGRFAM 178 208
IPR002885 Pentatricopeptide_rpt TIGRFAM 515 549
IPR002885 Pentatricopeptide_rpt TIGRFAM 387 420
IPR002885 Pentatricopeptide_rpt TIGRFAM 586 619
IPR002885 Pentatricopeptide_rpt TIGRFAM 282 312
IPR002885 Pentatricopeptide_rpt TIGRFAM 243 271
IPR002885 Pentatricopeptide_rpt TIGRFAM 459 486
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 548 582
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 618 652
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 583 617
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 513 547
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314

No CAZYmes available for this sequence

No external refs found!