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  5. Zm00001d054009_T001

Zm00001d054009_T001


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007459 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007459_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d054009_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d054009_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_267
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_130


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 326 347
IPR002885 Pentatricopeptide_rpt Pfam 251 300
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 216
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 287 321
IPR002885 Pentatricopeptide_rpt NCBIfam 254 288
IPR002885 Pentatricopeptide_rpt NCBIfam 185 217
IPR002885 Pentatricopeptide_rpt NCBIfam 290 318
IPR002885 Pentatricopeptide_rpt NCBIfam 219 253
IPR002885 Pentatricopeptide_rpt Pfam 212 244
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 252 286
IPR011990 TPR-like_helical_dom_sf Gene3D 268 371
IPR011990 TPR-like_helical_dom_sf Gene3D 147 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 217 251
IPR002885 Pentatricopeptide_rpt Pfam 212 244
IPR002885 Pentatricopeptide_rpt Pfam 251 300
IPR002885 Pentatricopeptide_rpt TIGRFAM 290 318
IPR002885 Pentatricopeptide_rpt TIGRFAM 219 253
IPR002885 Pentatricopeptide_rpt TIGRFAM 185 217
IPR002885 Pentatricopeptide_rpt TIGRFAM 254 288
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 252 286
IPR002885 Pentatricopeptide_rpt Pfam 326 347
IPR011990 TPR-like_helical_dom_sf Gene3D 268 371
IPR011990 TPR-like_helical_dom_sf Gene3D 147 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 217 251
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 287 321
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 216

No CAZYmes available for this sequence

No external refs found!