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  5. Sevir.2G153400.1

Sevir.2G153400.1


Description : RNA binding;abscisic acid binding


Gene families : OG_01_0004625 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004625_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G153400.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G153400.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_211
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_104


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002343 Hud_Sxl_RNA PRINTS 110 125
IPR002343 Hud_Sxl_RNA PRINTS 221 233
IPR002343 Hud_Sxl_RNA PRINTS 262 279
IPR002343 Hud_Sxl_RNA PRINTS 206 221
IPR035979 RBD_domain_sf SUPERFAMILY 201 303
IPR001202 WW_dom Pfam 579 605
IPR035979 RBD_domain_sf SUPERFAMILY 97 195
IPR036020 WW_dom_sf SUPERFAMILY 579 612
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 98 196
IPR001202 WW_dom ProSiteProfiles 580 607
IPR000504 RRM_dom ProSiteProfiles 201 281
IPR000504 RRM_dom SMART 202 277
IPR000504 RRM_dom SMART 111 187
IPR000504 RRM_dom Pfam 112 176
IPR000504 RRM_dom Pfam 203 267
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 197 286
IPR000504 RRM_dom ProSiteProfiles 110 191
IPR001202 WW_dom SMART 575 607
IPR001202 WW_dom CDD 578 607

No CAZYmes available for this sequence

No external refs found!