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  5. Sevir.1G053200.1

Sevir.1G053200.1


Description : methyl-CPG-binding domain 9


Gene families : OG_01_0003753 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003753_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G053200.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G053200.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_66


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 127 188
IPR011011 Znf_FYVE_PHD SUPERFAMILY 1247 1307
IPR036427 Bromodomain-like_sf SUPERFAMILY 1091 1211
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 1257 1301
IPR003888 FYrich_N ProSiteProfiles 363 416
IPR003889 FYrich_C ProSiteProfiles 524 665
IPR011011 Znf_FYVE_PHD SUPERFAMILY 125 200
IPR001965 Znf_PHD SMART 1256 1302
IPR001965 Znf_PHD SMART 126 189
IPR028942 WHIM1_dom Pfam 1342 1378
IPR019787 Znf_PHD-finger ProSiteProfiles 124 191
IPR019787 Znf_PHD-finger Pfam 1256 1302
IPR019787 Znf_PHD-finger ProSiteProfiles 1254 1304
IPR001487 Bromodomain ProSiteProfiles 1113 1194
IPR001487 Bromodomain Pfam 1143 1194
IPR036427 Bromodomain-like_sf Gene3D 1082 1208
IPR013083 Znf_RING/FYVE/PHD Gene3D 124 191
IPR013083 Znf_RING/FYVE/PHD Gene3D 1209 1316

No CAZYmes available for this sequence

No external refs found!