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  5. Sevir.2G158200.8

Sevir.2G158200.8


Description : ubiquitin-protein ligase 1


Gene families : OG_01_0003743 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003743_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G158200.8
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G158200.8
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_95


Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000569 HECT_dom ProSiteProfiles 3381 3722
IPR000569 HECT_dom CDD 3360 3720
IPR010309 E3_Ub_ligase_DUF908 Pfam 85 146
IPR010309 E3_Ub_ligase_DUF908 Pfam 202 361
IPR000569 HECT_dom SMART 3379 3722
IPR015940 UBA Pfam 1285 1321
IPR025527 HUWE1/Rev1_UBM Pfam 2633 2660
IPR025527 HUWE1/Rev1_UBM Pfam 2670 2701
IPR025527 HUWE1/Rev1_UBM Pfam 2708 2738
IPR035983 Hect_E3_ubiquitin_ligase SUPERFAMILY 3343 3714
IPR009060 UBA-like_sf SUPERFAMILY 1275 1331
IPR015940 UBA ProSiteProfiles 1283 1324
IPR010314 E3_Ub_ligase_DUF913 Pfam 421 786
IPR000569 HECT_dom Pfam 3411 3721
IPR016024 ARM-type_fold SUPERFAMILY 85 2170
IPR015940 UBA SMART 1285 1323

No CAZYmes available for this sequence

No external refs found!