Sevir.2G184000.1

Description : KU70 homolog

Gene families : OG_01_0001421 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001421_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G184000.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G184000.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_29

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003678	DNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003684	damaged DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006303	double-strand break repair via nonhomologous end joining	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032200	telomere organization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0042162	telomeric DNA binding	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043564	Ku70:Ku80 complex	ISM	GOs from InterProScan
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003034	SAP_dom	ProSiteProfiles	592	626
IPR036361	SAP_dom_sf	SUPERFAMILY	582	626
IPR016194	SPOC-like_C_dom_sf	Gene3D	263	444
IPR036465	vWFA_dom_sf	SUPERFAMILY	26	262
IPR003034	SAP_dom	SMART	592	626
IPR005160	Ku_C	Pfam	484	568
IPR005161	Ku_N	Pfam	30	264
IPR006165	Ku70	PIRSF	2	628
IPR036361	SAP_dom_sf	Gene3D	575	628
IPR036465	vWFA_dom_sf	Gene3D	27	259
IPR027388	Ku70_bridge/pillars_dom_sf	Gene3D	288	349
IPR003034	SAP_dom	Pfam	592	626
IPR006164	Ku70/Ku80_beta-barrel_dom	SMART	316	459
IPR006165	Ku70	PANTHER	2	628
IPR016194	SPOC-like_C_dom_sf	SUPERFAMILY	263	545
IPR006164	Ku70/Ku80_beta-barrel_dom	Pfam	273	470
IPR006165	Ku70	TIGRFAM	26	626

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.2G184000.1

Expression Profile

Co-expression Networks

Functional Annotation