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  5. Sevir.2G184600.1

Sevir.2G184600.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0019456 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019456_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G184600.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G184600.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_151


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
BP GO:0009451 RNA modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 400 434
IPR032867 DYW_dom Pfam 573 697
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR045215 PPR_prot_At1g15510 PANTHER 79 696
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 268 302
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 144 178
IPR002885 Pentatricopeptide_rpt Pfam 399 446
IPR002885 Pentatricopeptide_rpt TIGRFAM 271 297
IPR002885 Pentatricopeptide_rpt TIGRFAM 53 79
IPR002885 Pentatricopeptide_rpt TIGRFAM 177 200
IPR002885 Pentatricopeptide_rpt TIGRFAM 115 138
IPR002885 Pentatricopeptide_rpt TIGRFAM 301 330
IPR002885 Pentatricopeptide_rpt TIGRFAM 374 402
IPR002885 Pentatricopeptide_rpt TIGRFAM 402 435
IPR002885 Pentatricopeptide_rpt TIGRFAM 208 236
IPR002885 Pentatricopeptide_rpt TIGRFAM 146 177
IPR002885 Pentatricopeptide_rpt TIGRFAM 239 268
IPR002885 Pentatricopeptide_rpt TIGRFAM 475 498
IPR011990 TPR-like_helical_dom_sf Gene3D 350 468
IPR011990 TPR-like_helical_dom_sf Gene3D 469 644
IPR002885 Pentatricopeptide_rpt Pfam 271 298
IPR002885 Pentatricopeptide_rpt Pfam 146 175
IPR002885 Pentatricopeptide_rpt Pfam 115 138
IPR002885 Pentatricopeptide_rpt Pfam 53 80
IPR002885 Pentatricopeptide_rpt Pfam 177 200
IPR002885 Pentatricopeptide_rpt Pfam 474 498
IPR002885 Pentatricopeptide_rpt Pfam 301 330
IPR002885 Pentatricopeptide_rpt Pfam 84 108
IPR002885 Pentatricopeptide_rpt Pfam 208 237
IPR002885 Pentatricopeptide_rpt Pfam 22 47
IPR002885 Pentatricopeptide_rpt Pfam 239 268
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 113 143
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 97 575
IPR045215 PPR_prot_At1g15510 PANTHER 6 103
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 20 50
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 51 85
IPR011990 TPR-like_helical_dom_sf Gene3D 67 140
IPR011990 TPR-like_helical_dom_sf Gene3D 204 267
IPR011990 TPR-like_helical_dom_sf Gene3D 141 203
IPR011990 TPR-like_helical_dom_sf Gene3D 268 349
IPR011990 TPR-like_helical_dom_sf Gene3D 1 66

No CAZYmes available for this sequence

No external refs found!