Sevir.2G216800.1

Description : RNA recognition motif (RRM)-containing protein

Gene families : OG_01_0010698 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010698_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G216800.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G216800.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_36
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_13

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013087	Znf_C2H2_type	SMART	464	488
IPR013087	Znf_C2H2_type	SMART	193	218
IPR013087	Znf_C2H2_type	SMART	496	520
IPR013087	Znf_C2H2_type	SMART	255	279
IPR036236	Znf_C2H2_sf	SUPERFAMILY	451	494
IPR036236	Znf_C2H2_sf	SUPERFAMILY	495	526
IPR003604	Matrin/U1-like-C_Znf_C2H2	SMART	252	286
IPR003604	Matrin/U1-like-C_Znf_C2H2	SMART	497	527
IPR003604	Matrin/U1-like-C_Znf_C2H2	SMART	461	495
IPR003604	Matrin/U1-like-C_Znf_C2H2	SMART	190	225
IPR013087	Znf_C2H2_type	ProSitePatterns	466	488
IPR036236	Znf_C2H2_sf	SUPERFAMILY	254	288

No CAZYmes available for this sequence

External Links

No external refs found!