Sevir.2G237500.1

Description : transcription regulatory protein SNF2, putative

Gene families : OG_01_0007580 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007580_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G237500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G237500.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	SMART	398	435
IPR036427	Bromodomain-like_sf	Gene3D	1813	1933
IPR036427	Bromodomain-like_sf	SUPERFAMILY	1866	1929
IPR001650	Helicase_C	ProSiteProfiles	1252	1429
IPR014978	Gln-Leu-Gln_QLQ	Pfam	400	433
IPR014001	Helicase_ATP-bd	ProSiteProfiles	934	1099
IPR038718	SNF2-like_sf	Gene3D	913	1161
IPR001650	Helicase_C	SMART	1278	1362
IPR001650	Helicase_C	Pfam	1253	1362
IPR001487	Bromodomain	SMART	1817	1927
IPR027417	P-loop_NTPase	SUPERFAMILY	1156	1492
IPR014978	Gln-Leu-Gln_QLQ	ProSiteProfiles	399	435
IPR000330	SNF2_N	Pfam	925	1229
IPR027417	P-loop_NTPase	SUPERFAMILY	900	1152
IPR027417	P-loop_NTPase	Gene3D	1162	1371
IPR014001	Helicase_ATP-bd	SMART	918	1110

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.2G237500.1

Expression Profile

Co-expression Networks

Functional Annotation