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  5. Sevir.2G251800.2

Sevir.2G251800.2


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015387 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015387_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G251800.2
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G251800.2
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_95


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt TIGRFAM 318 353
IPR002885 Pentatricopeptide_rpt TIGRFAM 180 214
IPR002885 Pentatricopeptide_rpt TIGRFAM 284 316
IPR002885 Pentatricopeptide_rpt Pfam 284 328
IPR002885 Pentatricopeptide_rpt Pfam 178 224
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 178 213
IPR011990 TPR-like_helical_dom_sf Gene3D 255 452
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 281 315
IPR011990 TPR-like_helical_dom_sf Gene3D 35 140
IPR002885 Pentatricopeptide_rpt Pfam 355 379
IPR002885 Pentatricopeptide_rpt Pfam 254 274
IPR011990 TPR-like_helical_dom_sf Gene3D 141 253
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 316 351

No CAZYmes available for this sequence

No external refs found!