Sevir.2G272700.1

Description : DNA topoisomerase, type IA, core

Gene families : OG_01_0001376 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001376_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G272700.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G272700.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_67

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	ISM	GOs from InterProScan
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013826	Topo_IA_cen_sub3	Gene3D	290	415
IPR013497	Topo_IA_cen	Pfam	165	575
IPR013497	Topo_IA_cen	CDD	167	585
IPR000380	Topo_IA	PANTHER	3	843
IPR013497	Topo_IA_cen	PRINTS	499	513
IPR013497	Topo_IA_cen	PRINTS	206	224
IPR013497	Topo_IA_cen	PRINTS	401	417
IPR013497	Topo_IA_cen	PRINTS	109	122
IPR013497	Topo_IA_cen	PRINTS	324	333
IPR006171	TOPRIM_domain	SMART	4	135
IPR013825	Topo_IA_cen_sub2	Gene3D	230	483
IPR003602	Topo_IA_DNA-bd_dom	SMART	282	537
IPR013824	Topo_IA_cen_sub1	Gene3D	171	585
IPR006171	TOPRIM_domain	Pfam	5	148
IPR003601	Topo_IA_2	SMART	140	236
IPR023405	Topo_IA_core_domain	SUPERFAMILY	4	625
IPR006171	TOPRIM_domain	ProSiteProfiles	4	147
IPR034144	TOPRIM_TopoIII	CDD	4	161
IPR023406	Topo_IA_AS	ProSitePatterns	319	333

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.2G272700.1

Expression Profile

Co-expression Networks

Functional Annotation