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  5. Sevir.2G284400.1

Sevir.2G284400.1


Description : RNA binding


Gene families : OG_01_0001992 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001992_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G284400.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G284400.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_3


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 37 189
IPR000504 RRM_dom ProSiteProfiles 38 111
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 35 113
IPR000504 RRM_dom ProSiteProfiles 116 188
IPR000504 RRM_dom Pfam 40 103
IPR000504 RRM_dom Pfam 118 181
IPR000504 RRM_dom Pfam 245 299
IPR035979 RBD_domain_sf SUPERFAMILY 229 309
IPR000504 RRM_dom ProSiteProfiles 231 306
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 227 320
IPR012921 SPOC_C Pfam 431 548
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 114 226
IPR000504 RRM_dom SMART 233 302
IPR000504 RRM_dom SMART 39 107
IPR000504 RRM_dom SMART 117 184

No CAZYmes available for this sequence

No external refs found!