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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0016106 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016106_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G288000.1 | No neighbors in network |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G288000.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_34 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 183 | 245 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 561 | 595 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 394 | 414 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 60 | 82 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 289 | 315 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 261 | 286 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 565 | 593 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 158 | 183 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 58 | 92 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 188 | 221 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 320 | 354 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 422 | 456 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 60 | 82 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 289 | 316 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 246 | 375 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 376 | 474 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 186 | 232 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 318 | 366 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 419 | 467 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 26 | 156 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 186 | 220 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 475 | 600 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 420 | 454 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 318 | 352 |
No CAZYmes available for this sequence
| No external refs found! |