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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0013467 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013467_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G304200.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G304200.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_123 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_115 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 379 | 413 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 222 | 336 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 82 | 221 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 307 | 341 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 414 | 448 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 449 | 484 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 416 | 449 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 451 | 485 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 173 | 198 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 239 | 273 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 381 | 415 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 345 | 380 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 310 | 343 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 274 | 308 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 413 | 461 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 236 | 284 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 306 | 354 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 272 | 306 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 358 | 389 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 220 | 478 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 237 | 271 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 342 | 378 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 358 | 532 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 173 | 198 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 136 | 162 |
No CAZYmes available for this sequence
| No external refs found! |