Bradi1g03180.1

Description : DEAD box RNA helicase (RH3)

Gene families : OG_01_0004178 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004178_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium distachyon coexpression network - v0.2 (X-meeting 2023): Bradi1g03180.1
Cluster	Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_28

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012562	GUCT	Pfam	522	622
IPR036875	Znf_CCHC_sf	SUPERFAMILY	738	769
IPR027417	P-loop_NTPase	Gene3D	96	305
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	118	290
IPR014001	Helicase_ATP-bd	ProSiteProfiles	125	301
IPR001650	Helicase_C	ProSiteProfiles	330	475
IPR001650	Helicase_C	SMART	355	435
IPR027417	P-loop_NTPase	Gene3D	323	515
IPR001878	Znf_CCHC	ProSiteProfiles	753	768
IPR001878	Znf_CCHC	SMART	752	768
IPR027417	P-loop_NTPase	SUPERFAMILY	171	456
IPR001878	Znf_CCHC	Pfam	752	768
IPR014001	Helicase_ATP-bd	SMART	113	318
IPR001650	Helicase_C	Pfam	327	435

No CAZYmes available for this sequence

External Links

No external refs found!